Data: Accession numbers and metadata of 682 global K. pneumoniae complex genomes

Metadata of a global collection of 682 K. pneumoniae complex genomes. 66 genomes from kenya from the Henson et al https://doi.org/10.1016/j.ijmm.2017.07.006

btESBL_kleb_global_metadata

Format

A dataframe with 682 rows and 23 variables

name

unique identifier

ESBL

ESBL gene present? ESBL= yes, 0 = no

Sample accession

NCBI accession number

study

study sample was taken from

Sample Source

Source of sample

Isolate Type

For human samples, are they carriage or infecting?

location

Lcoation (global, Kenyan, Malawian)

ST

Multilocus sequence type as determined by ARIBA

K_locus

K. pnemo complex inferred K locus from Kleborate

K_locus_confidence

Kleborate defined K locus confidence

O_locus

K. pnemo complex inferred O locus from Kleborate

O_locus_confidence

Kleborate defined O locus confidence

YbST

Klebsiella YbST allele as per Kleborate

CbST

Klebsiella CbST allele as per Kleborate

AbST

Klebsiella AbST allele as per Kleborate

SmST

Klebsiella SmST allele as per Kleborate

rmpA

Klebsiella rmpA allele as per Kleborate

rmpA2

Klebsiella rmpA2 allele as per Kleborate

ybt

Presence of yersiniabactin virulence locus (0=absent,1=present)

clb

Presence of colibactin virulence locus (0=absent,1=present)

iuc

Presence of aerobactin virulence locus (0=absent,1=present)

iro

Presence of salmochelin virulence locus (0=absent,1=present)

Malawi

Was sample collected in Malawi (0=no,1=yes)

Details

72 genomes fro Malawi described in Musicha et al https://doi.org/10.1093/jac/dkz032

100 genomies from Malawi as described in Cornick et al https://doi.org/10.1101/2020.08.06.236117

288 global genomes from Holt et al https://doi.org/10.1073/pnas.1501049112