btESBL_ecoli_globalst410_tree.RdMidpoint rooted maximum likelihood phylogeny for E. coli incorporating all ST410 study isolates 327 ST410 context genomes from Feng et al 2019 (doi:10.1038/s42003-019-0569-1) using multiple sequence alignment from mapping to reference. (see manuscript for details)
btESBL_ecoli_globalst410_treeA "phylo" object ("ape" package)