btESBL_ecoli_globalst167_tree.RdMidpoint rooted maximum likelihood core gene phylogeny for E. coli incorporating all ST167 study isolates and 108 ST167 context genomes from Patino-Navarrete et al 2020 (doi:10.1186/s13073-019-0699-6) obtained from multiple sequence alignment from mapping to reference. (see manuscript for details)
btESBL_ecoli_globalst167_treeA "phylo" object ("ape" package)