btESBL_ecoli_globalst131_tree.RdMidpoint rooted maximum likelihood phylogeny for E. coli incorporating all ST131 study isolates and all ST131 E. coli from a study of global ST131 (Mcnally et al 2019 https://doi.org/10.1128/mBio.00644-19) reconstructed from a multiple sequence alignment from mapping to reference. (see manuscript for details)
btESBL_ecoli_globalst131_treeA "phylo" object ("ape" package)