Data: Contig cluster assignment in sensitivity analyses — btESBL_contigclusters

Contig cluster assignment varying cd-hit sequence identity from 0.95 - 1.00 and length cutoff from 0-0.8 Care! The cluster ids are not unqiue! Only the cluster id-len_diff_cutoff-ident_cutoff combination is unique. See the code for how this is managed in practice. See manuscript for further details

btESBL_contigclusters_sensax

Format

A tidy data frame with 6426 rows and 8 variables:

cluster: Cluster id from cd-hit
id: Sequence id within cluster from cd-hit
length: Length of sequence, bases
contig: Contid unique identfier
lane: sample ID
len_diff_cutoff: Length difference cutoff (-s in cd-hit)
ident_cutoff: Sequence identity cutoff (-c in cd hit)