btESBL_contigclusters_msa_blastoutput.RdOutputs of BLASTing contig cluster representative cluster agains the ISFinder PlasmidFinder and SRST2 databases.
btESBL_contigclusters_msa_blastoutputA named list of ten data frames, where name is cluster id. Columns are:
Query sequence name
Source (ie. database) sequence name
Source gene family if IS/SRST2
Source gene if IS/SRST2
Sequence identfity of query
Source gene length
Length of match of query
Query match start coordinate
Query end match coordinate
Source match start coordinate
Source end match coordinate
BLAST e value of match
BLAST bitscore of match
Type of database used: amr,is, plasmid