BTaetiology

Aetiology of sepsis of 225 adults with sepsis in Blantyre, Malawi

BTaetiology

Format

A data frame with 225 rows and 24 variables:

pid

Study identifier

hivstatus

HIV status one of (Non reactive, Reactive, Unknown)

mtb bsi

M. tuberculosis cultured from blood? (1 = yes, 0 = no, NA = no valid result)

malaria

Malaria? (1 = yes, 0 = no, NA = no valid result)

uLAM

Positive uLAM result? (1 = yes, 0 = no, NA = no valid result)

Xpert

Positive sputum Xpert? (1 = yes, 0 = no, NA = no valid result)

dengue

Dengue diagnosis as per case definition? (1 = yes, 0 = no, NA = no valid result)

chik

Chikungunya diagnosis as per case definition? Dengue diagnosis as per case definition? (1 = yes, 0 = no, NA = no valid result)

bact_target_pcr

Pathogenic bacterial target found on PCR array card? (1 = yes, 0 = no, NA = no valid result)

lepto

Leptospirosis diagnosis as per case definition? (1 = yes, 0 = no, NA = no valid result)

SF

Spotted fever group Rickettsiosis diagnosis as per case definition? (1 = yes, 0 = no, NA = no valid result)

ET

Epidemic Typhus diagnosis as per case definition? (1 = yes, 0 = no, NA = no valid result)

borrelia

Borreliosis diagnosis as per case definition? (1 = yes, 0 = no, NA = no valid result)

rift_valley_fever

Rift Valley fever diagnosis as per case definition? (1 = yes, 0 = no, NA = no valid result)

CrAg_LFA

Positive cryptococcal antigen lateral flow assay on CSF (1 = yes, 0 = no, NA = no valid result)

bsi.bacterial

Bacterial bloodstream infection as per case definition? (1 = yes, 0 = no, NA = no valid result)

bsi.fungal

Fungal bloodstream infection as per case definition? (1 = yes, 0 = no, NA = no valid result)

csf.fungal

Fungal meningitis as per case definition? (1 = yes, 0 = no, NA = no valid result)

csf.bacterial

Bacterial meningitis as per case definition? (1 = yes, 0 = no, NA = no valid result)

inv.fungal

Any invasive fungal infection as per case definition? (1 = yes, 0 = no, NA = no valid result)

inv.bacterial

Any invasive bacterial infection as per case definition? (1 = yes, 0 = no, NA = no valid result)

tb

Tuberculosis as per case definition? (1 = yes, 0 = no, NA = no valid result)

arbovirus

Any arboviral infection as per case definition? (1 = yes, 0 = no, NA = no valid result)

ricks

Any rickettsial infection as per case definition? (1 = yes, 0 = no, NA = no valid result)